PoplarV1, Main, Exploration, bibRecord, 000901

Identification of Shoot Differentiation-Related Genes in Populus euphratica Oliv.

Identifieur interne : 000901 ( Main/Exploration ); précédent : 000900; suivant : 000902

Identification of Shoot Differentiation-Related Genes in Populus euphratica Oliv.

Auteurs : Yaru Fu [République populaire de Chine] ; Tianyu Dong [République populaire de Chine] ; Lizhi Tan [République populaire de Chine] ; Danni Yin [République populaire de Chine] ; Miaomiao Zhang [République populaire de Chine] ; Guomiao Zhao [République populaire de Chine] ; Meixia Ye [République populaire de Chine] ; Rongling Wu [République populaire de Chine, États-Unis]

Source :

Genes [ 2073-4425 ] ; 2019.

RBID : pubmed:31835855

Descripteurs français

KwdFr :
- Analyse de profil d'expression de gènes (méthodes), Analyse de séquence d'ARN (méthodes), Différenciation cellulaire (génétique), Facteur de croissance végétal (génétique), Gènes de plante (génétique), Organogenèse des plantes (génétique), Populus (croissance et développement), Populus (génétique), Pousses de plante (croissance et développement), Pousses de plante (génétique), Régulation de l'expression des gènes végétaux (génétique), Transcriptome (génétique).
MESH :
- croissance et développement : Populus, Pousses de plante.
- génétique : Différenciation cellulaire, Facteur de croissance végétal, Gènes de plante, Organogenèse des plantes, Populus, Pousses de plante, Régulation de l'expression des gènes végétaux, Transcriptome.
- méthodes : Analyse de profil d'expression de gènes, Analyse de séquence d'ARN.

English descriptors

KwdEn :
- Cell Differentiation (genetics), Gene Expression Profiling (methods), Gene Expression Regulation, Plant (genetics), Genes, Plant (genetics), Organogenesis, Plant (genetics), Plant Growth Regulators (genetics), Plant Shoots (genetics), Plant Shoots (growth & development), Populus (genetics), Populus (growth & development), Sequence Analysis, RNA (methods), Transcriptome (genetics).
MESH :
- chemical , genetics : Plant Growth Regulators.
- genetics : Cell Differentiation, Gene Expression Regulation, Plant, Genes, Plant, Organogenesis, Plant, Plant Shoots, Populus, Transcriptome.
- growth & development : Plant Shoots, Populus.
- methods : Gene Expression Profiling, Sequence Analysis, RNA.

Abstract

De novo shoot regeneration is one of the important manifestations of cell totipotency in organogenesis, which reflects a survival strategy organism evolved when facing natural selection. Compared with tissue regeneration, and somatic embryogenesis, de novo shoot regeneration denotes a shoot regeneration process directly from detatched or injured tissues of plant. Studies on plant shoot regeneration had identified key genes mediating shoot regeneration. However, knowledge was derived from Arabidopsis; the regeneration capacity is hugely distinct among species. To achieve a comprehensive understanding of the shoot regeneration mechanism from tree species, we select four genetic lines of Populus euphratica from a natural population to be sequenced at transcriptome level. On the basis of the large difference of differentiation capacity, between the highly differentiated (HD) and low differentiated (LD) groups, the analysis of differential expression identified 4920 differentially expressed genes (DEGs), which were revealed in five groups of expression patterns by clustering analysis. Enrichment showed crucial pathways involved in regulation of regeneration difference, including "plant hormone signal transduction", "cell differentiation", "cellular response to auxin stimulus", and "auxin-activated signaling pathway". The expression of nine genes reported to be associated with shoot regeneration was validated using quantitative real-time PCR (qRT-PCR). For the specificity of regeneration mechanism with P. euphratica, large amount of DEGs involved in "plant-pathogen interaction", ubiquitin-26S proteosome mediated proteolysis pathway, stress-responsive DEGs, and senescence-associated DEGs were summarized to possibly account for the differentiation difference with distinct genotypes of P. euphratica. The result in this study helps screening of key regulators in mediating the shoot differentiation. The transcriptomic characteristic in P. euphratica further enhances our understanding of key processes affecting the regeneration capacity of de novo shoots among distinct species.

DOI: 10.3390/genes10121034
PubMed: 31835855
PubMed Central: PMC6947848

Affiliations:

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000565
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Le document en format XML

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<term>Facteur de croissance végétal (génétique)</term>
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<term>Organogenèse des plantes (génétique)</term>
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<term>Populus (génétique)</term>
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<front><div type="abstract" xml:lang="en">De novo shoot regeneration is one of the important manifestations of cell totipotency in organogenesis, which reflects a survival strategy organism evolved when facing natural selection. Compared with tissue regeneration, and somatic embryogenesis, de novo shoot regeneration denotes a shoot regeneration process directly from detatched or injured tissues of plant. Studies on plant shoot regeneration had identified key genes mediating shoot regeneration. However, knowledge was derived from <i>Arabidopsis</i>
; the regeneration capacity is hugely distinct among species. To achieve a comprehensive understanding of the shoot regeneration mechanism from tree species, we select four genetic lines of <i>Populus euphratica</i>
 from a natural population to be sequenced at transcriptome level. On the basis of the large difference of differentiation capacity, between the highly differentiated (HD) and low differentiated (LD) groups, the analysis of differential expression identified 4920 differentially expressed genes (DEGs), which were revealed in five groups of expression patterns by clustering analysis. Enrichment showed crucial pathways involved in regulation of regeneration difference, including "plant hormone signal transduction", "cell differentiation", "cellular response to auxin stimulus", and "auxin-activated signaling pathway". The expression of nine genes reported to be associated with shoot regeneration was validated using quantitative real-time PCR (qRT-PCR). For the specificity of regeneration mechanism with <i>P. euphratica</i>
, large amount of DEGs involved in "plant-pathogen interaction", ubiquitin-26S proteosome mediated proteolysis pathway, stress-responsive DEGs, and senescence-associated DEGs were summarized to possibly account for the differentiation difference with distinct genotypes of <i>P. euphratica</i>
. The result in this study helps screening of key regulators in mediating the shoot differentiation. The transcriptomic characteristic in <i>P. euphratica</i>
 further enhances our understanding of key processes affecting the regeneration capacity of de novo shoots among distinct species.</div>
</front>
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 Oliv.</ArticleTitle>
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<Abstract><AbstractText>De novo shoot regeneration is one of the important manifestations of cell totipotency in organogenesis, which reflects a survival strategy organism evolved when facing natural selection. Compared with tissue regeneration, and somatic embryogenesis, de novo shoot regeneration denotes a shoot regeneration process directly from detatched or injured tissues of plant. Studies on plant shoot regeneration had identified key genes mediating shoot regeneration. However, knowledge was derived from <i>Arabidopsis</i>
; the regeneration capacity is hugely distinct among species. To achieve a comprehensive understanding of the shoot regeneration mechanism from tree species, we select four genetic lines of <i>Populus euphratica</i>
 from a natural population to be sequenced at transcriptome level. On the basis of the large difference of differentiation capacity, between the highly differentiated (HD) and low differentiated (LD) groups, the analysis of differential expression identified 4920 differentially expressed genes (DEGs), which were revealed in five groups of expression patterns by clustering analysis. Enrichment showed crucial pathways involved in regulation of regeneration difference, including "plant hormone signal transduction", "cell differentiation", "cellular response to auxin stimulus", and "auxin-activated signaling pathway". The expression of nine genes reported to be associated with shoot regeneration was validated using quantitative real-time PCR (qRT-PCR). For the specificity of regeneration mechanism with <i>P. euphratica</i>
, large amount of DEGs involved in "plant-pathogen interaction", ubiquitin-26S proteosome mediated proteolysis pathway, stress-responsive DEGs, and senescence-associated DEGs were summarized to possibly account for the differentiation difference with distinct genotypes of <i>P. euphratica</i>
. The result in this study helps screening of key regulators in mediating the shoot differentiation. The transcriptomic characteristic in <i>P. euphratica</i>
 further enhances our understanding of key processes affecting the regeneration capacity of de novo shoots among distinct species.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Fu</LastName>
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<ForeName>Rongling</ForeName>
<Initials>R</Initials>
<AffiliationInfo><Affiliation>Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China.</Affiliation>
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<AffiliationInfo><Affiliation>Center for Statistical Genetics, The Pennsylvania State University, Hershey, PA 17033, USA.</Affiliation>
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<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">Populus euphratica Oliv.</Keyword>
<Keyword MajorTopicYN="Y">RNA-Seq</Keyword>
<Keyword MajorTopicYN="Y">differentially expressed gene (DEG)</Keyword>
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<CoiStatement>The authors declare no conflict of interest.</CoiStatement>
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<affiliations><list><country><li>République populaire de Chine</li>
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<name sortKey="Ye, Meixia" sort="Ye, Meixia" uniqKey="Ye M" first="Meixia" last="Ye">Meixia Ye</name>
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<name sortKey="Zhao, Guomiao" sort="Zhao, Guomiao" uniqKey="Zhao G" first="Guomiao" last="Zhao">Guomiao Zhao</name>
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Identification of Shoot Differentiation-Related Genes in Populus euphratica Oliv.

Identification of Shoot Differentiation-Related Genes in Populus euphratica Oliv.

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